Data
Selected published datasets
FANTOM5 enhancers
Divergently transcribed enhancers, identified using CAGE data within the FANTOM consortium.
- Paper: Andersson R, et al. An atlas of active enhancers across human cell types and tissues. Nature. 2014.
- Original data in hg19 and mm9
- Reanalyzed human CAGE data realigned to GRCh38 (hg38)
- Reanalyzed mouse CAGE data realigned to GRCm38 (mm10)
CAGE data across 108 LCLs
CAGE data across 108 Epstein-Barr virus (EBV)-transformed lymphoblastoid cell lines (LCLs) of African origin, 89 from Yoruba in Ibadan, Nigeria (YRI) and 19 from Luhya in Webuye, Kenya (LWK).
- Paper: Einarsson H, et al. Promoter sequence and architecture determine expression variability and confer robustness to genetic variants. Elife. 2022.
- Data: NCBI Gene Expression Omnibus. GSE188131
Enhancer-gene regulatory interactions
scE2G predictions of enhancer-gene regulartory interactions across seven 10x multiome datasets: three K562 datasets, GM12878, PBMC, BMMC, and pancreatic islets.
- Paper: Sheth, Qiu, et al. Mapping enhancer-gene regulatory interactions from single-cell data. bioRxiv. 2024
- scE2G predictions (see files named [Dataset]/scE2G/scE2G_multiome.[CellType].predictions.tsv.gz)