Export bigWig files for each replicate, optionally merging strands.

Export bigWig files for each replicate, optionally merging strands.

Usage

writeBw(
  object,
  dir,
  replicates = "all",
  inputAssay = "TPM",
  splitByStrand = TRUE
)

Arguments

object

A RangedSummarizedExperiment object containing the CTSSs.

dir

A character string of the directory to export the bigWig files to.

replicates

A character vector of replicate names to export. Default is "all".

inputAssay

A character string of the assay to use for the bigWig scores. Default is "TPM".

splitByStrand

A logical indicating whether to export strands separately. Default is TRUE.

Value

No return value. The function exports bigWig files to the specified directory.