Quantify the expression of divergent loci (identified by divergentLoci).

Quantify the expression of divergent loci (identified by divergentLoci).

Usage

quantifyDivergentLoci(
  loci,
  ctss,
  inputAssay = "counts",
  requireDisjoint = TRUE
)

Arguments

loci

A GRanges object containing the divergent loci.

ctss

A RangedSummarizedExperiment resulting from CAGEfightR::quantifyCTSSs().

inputAssay

The assay to use for quantification.

requireDisjoint

Logical indicating whether to require divergent loci to be disjoint.

Value

A SummarizedExperiment object containing the quantified divergent loci.