Calculate the complexity of a CTSS dataset and generate data for a fingerprint plot.

This function calculates the complexity of a given CTSS dataset and generates a data frame suitable for creating a fingerprint plot.

Usage

fingerPrint(object, replicates, inputAssay = "counts", n = 1e+05)

Arguments

object

A RangedSummarizedExperiment resulting from CAGEfightR::quantifyCTSSs().

replicates

A character vector of replicate names to include in the analysis.

inputAssay

A character string of the assay to use for the counts. Default is "counts".

n

The number of points to include in the fingerprint plot. Default is 100,000.

Value

A data frame containing the sample names, raw counts, cumulative sums, relative cumulative sums, and ranks for each sample.