Calculate the auto correlation of CTSSs over tag clusters according to pooled values and the cross correlation with opposite strand CTSSs

Calculate the auto correlation of CTSSs over tag clusters according to pooled values and the cross correlation with opposite strand CTSSs

Usage

corrProfiles(object, pooled, flank = 300, lag.max = 300)

Arguments

object

A GRanges object of tag clusters.

pooled

A RangedSummarizedExperiment object containing the CTSSs and the pooled values in the score column (resulting from CAGEfightR::calcPooled()).

flank

The number of base pairs to consider around each tag cluster.

lag.max

The maximum lag to consider for the correlation.

Value

A list containing the auto correlation matrix and cross correlation matrix