Calculate the total tags for each annotation type.
Usage
calcAnnoCTSS(data, txModels, uniqueCTSS = FALSE)
Arguments
- data
A RangedSummarizedExperiment object containing the CTSSs.
- txModels
A TxDb object containing the the transcript models for annotation.
- uniqueCTSS
A logical indicating whether to count only unique CTSSs (TRUE) or to sum the total tags (FALSE).
Value
A data frame containing the total tags for each annotation type.