TPM normalize expression counts, considering size factors.

TPM normalize expression counts, considering size factors.

Usage

TPMnormalizeBySizeFactors(
  object,
  sizeFactors,
  inputAssay = "counts",
  outputAssay = "TPM"
)

Arguments

object

A SummarizedExperiment object.

sizeFactors

The size factors to use for the normalization.

inputAssay

The assay to use.

outputAssay

The assay to use for the output.

Value

A SummarizedExperiment object with the TPM normalized counts.