Articles

Getting started

Getting Started with the PRIME Toolkit

Installing PRIME

PRIMEmodel

Installing PRIMEmodel

Predicting Regulatory Elements with PRIMEmodel

PRIMEprep

Preprocessing CAGE Data with PRIMEprep

PRIME

CTSS Quantification and Quality Control

Tag cluster decomposition

Calling Divergent Loci

Normalization, Subsampling, and Batch Handling

Estimating Genomic Background Noise

Workflows

End-to-End Workflow: From FASTQ to Regulatory Elements